PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g030370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 197aa    MW: 21771.4 Da    PI: 8.4882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g030370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016113135123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k+F++   L  H r+H
  Sopen12g030370.1 113 HECTICHKTFPSGQALGGHKRRH 135
                       78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.2E-66192No hitNo description
SMARTSM003550.46688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2016693IPR007087Zinc finger, C2H2
PfamPF139123.1E-96690IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576672.47E-6110140No hitNo description
PfamPF139121.6E-13112137IPR007087Zinc finger, C2H2
SMARTSM003550.033113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MALEALNSWT KGKIRSKRSR SIVMEEQPSI ITEEEYLALC LLMLARSNNN NNNNNSNVSI  60
TGDNLYKCSV CCKCFGSYQA LGGHKASHRS NRDKVYEQSV VITSGNVVSG RTHECTICHK  120
TFPSGQALGG HKRRHYEGKM TSSSSSNGVG SVNNFDLNIS VLPDNWPGFA SGEDEVESPH  180
PTKKLKQFPS LELFQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060801.11e-147PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962896e-45ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLK4DGR01e-119K4DGR0_SOLLC; Uncharacterized protein
STRINGSolyc12g088390.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-41salt tolerance zinc finger